usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): -1.34163333333333 18.3692666666667 16.2028333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 935 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 449 WARNING: removing a crystallographic sphere that is distance 7.21006165022186 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 441 Number of spheres polar: 153, nonpolar: 156, out of current total: 441 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.32659 8.61226 8.40864 24.43300 6.43800 26.12231 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 268 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 197 Spheres center of coords (x y z): -0.854918020304569 18.1842260913706 17.0095220812183 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.00894487287251 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 29