usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): -3.06244444444444 8.69322222222223 19.675
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 761
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 575
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 575
Number of spheres polar: 296, nonpolar: 177, out of current total: 575
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.98053 6.87073 -1.24311 18.04394 10.34991 29.63397
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 266
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 222
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 162
Spheres center of coords (x y z): -3.52127845679012 4.16109481481482 20.3008415432099
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.56902399484377
Final number of output spheres is: 60
Number of polar spheres: 38
Number of nonpolar spheres: 14
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 9