usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 43.87656 -1.2594 31.54508 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 687 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 454 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 447 Number of spheres polar: 122, nonpolar: 179, out of current total: 447 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 33.99817 53.85257 -11.24884 8.69238 23.44006 41.29600 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 258 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 234 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 219 Spheres center of coords (x y z): 44.4041404109589 -1.71895 34.2222408219178 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93228072375624 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 25