usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.4529230769231 23.7610769230769 49.3808846153846 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 837 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 525 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 523 Number of spheres polar: 174, nonpolar: 202, out of current total: 523 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.51533 54.40472 13.76800 30.99590 39.63271 59.26346 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 188 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 153 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 137 Spheres center of coords (x y z): 46.5928767153285 24.8483245985401 48.6008859124088 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.93325936296441 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 26