usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 44.4846153846154 23.6472307692308 49.2805384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 829 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 518 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 514 Number of spheres polar: 194, nonpolar: 189, out of current total: 514 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 35.05693 54.41326 13.64982 31.50567 39.54134 59.27337 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 273 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 252 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 238 Spheres center of coords (x y z): 46.9660286134454 24.4120407983193 48.8946586134454 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.14998871108993 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 26