usefragsph not on
There are 44 ligand heavy atoms
Ligand center of coords (x y z): -2.50213636363636 4.26475 24.7254545454545
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1125
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 569
WARNING: removing a crystallographic sphere that is distance 8.44255115471621 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.39305755421936 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.52015764462421 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 7.09294219629626 angstroms from closest receptor atom
WARNING: removing a crystallographic sphere that is distance 8.47865113092879 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 557
Number of spheres polar: 181, nonpolar: 195, out of current total: 557
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.48660 7.35969 -5.68579 14.25635 14.76563 34.67339
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 218
WARNING: spheres 23 and 24 are both crystallographic and are <0.8 to each other (not removing either of them)
WARNING: spheres 24 and 23 are both crystallographic and are <0.8 to each other (not removing either of them)
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 190
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 175
Spheres center of coords (x y z): -2.764922 3.08893165714286 22.9871161714286
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.62356988978277
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 23
Number of spheres that are near neither polar nor nonpolar receptor atoms: 11
Final number of spheres that are from crystallographic ligand: 39