usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): -1.95151515151515 5.27524242424242 23.9586666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1035 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 542 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 540 Number of spheres polar: 220, nonpolar: 178, out of current total: 540 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.95053 7.99043 -4.46269 15.26559 14.01100 33.92923 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 210 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 171 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 159 Spheres center of coords (x y z): -2.99853050314465 4.36378106918239 23.6563773584906 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.85824837022374 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 33