usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): 44.1700454545455 22.2437727272727 51.5082727272727 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1037 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 703 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 698 Number of spheres polar: 312, nonpolar: 211, out of current total: 698 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.18094 53.94479 12.24800 31.96242 41.51464 61.50600 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 357 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 309 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 282 Spheres center of coords (x y z): 44.4380608156028 24.7661841843972 50.5638655319149 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.70592629488886 Final number of output spheres is: 60 Number of polar spheres: 27 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 22