usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): 41.7546428571429 23.3371071428571 53.7228214285714
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 955
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 472
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 472
Number of spheres polar: 157, nonpolar: 166, out of current total: 472
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 31.78494 51.73069 13.34330 32.02300 43.79741 63.55713
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 259
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 229
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 199
Spheres center of coords (x y z): 41.7277666834171 24.2007273869347 53.4940102512563
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.58975528243701
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 20
Number of spheres that are near neither polar nor nonpolar receptor atoms: 24
Final number of spheres that are from crystallographic ligand: 28