usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 10.7260357142857 24.5405357142857 20.9406785714286 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1105 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 692 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 688 Number of spheres polar: 251, nonpolar: 205, out of current total: 688 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 0.78093 20.63450 14.66227 34.30975 11.05900 30.89282 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 387 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 345 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 338 Spheres center of coords (x y z): 9.82203213017751 26.0142707100592 21.1737757692308 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.7998111100673 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 28