usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 22.1449285714286 2.55310714285714 29.0702142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 976 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 497 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 491 Number of spheres polar: 199, nonpolar: 153, out of current total: 491 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.22017 32.04319 -7.35559 12.47274 19.15909 39.03229 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 295 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 254 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 237 Spheres center of coords (x y z): 22.1605638396624 3.24066261603376 30.3404584810127 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.972313237837 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 28