usefragsph not on
There are 13 ligand heavy atoms
Ligand center of coords (x y z): 13.9171538461538 67.1539230769231 10.5534615384615
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 778
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 427
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 425
Number of spheres polar: 229, nonpolar: 128, out of current total: 425
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 4.00615 23.69695 57.18533 77.13942 0.72790 20.53853
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 214
WARNING: spheres 3 and 4 are both crystallographic and are <0.5 to each other (not removing either of them)
WARNING: spheres 4 and 3 are both crystallographic and are <0.5 to each other (not removing either of them)
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 184
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 89
Spheres center of coords (x y z): 14.5531020224719 64.9043188764045 14.215663258427
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.46773871278935
Final number of output spheres is: 60
Number of polar spheres: 35
Number of nonpolar spheres: 11
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 13