usefragsph not on There are 39 ligand heavy atoms Ligand center of coords (x y z): 24.2773846153846 20.4181794871795 28.334717948718 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1187 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 557 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 550 Number of spheres polar: 130, nonpolar: 234, out of current total: 550 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 14.40443 34.19601 10.50615 30.39697 18.36535 38.26249 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 325 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 296 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 290 Spheres center of coords (x y z): 24.2619409655173 21.8423921034483 27.9968373103448 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.57013296886843 Final number of output spheres is: 60 Number of polar spheres: 18 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 39