There are 39 ligand heavy atoms Ligand center of coords (x y z): 24.2773846153846 20.4181794871795 28.334717948718 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 14801 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 7909 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 7909 Number of spheres polar: 5433, nonpolar: 1903, out of current total: 7909 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.28720 36.27620 8.42560 31.39780 16.33920 40.33020 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 1115 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 552 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 534 Spheres center of coords (x y z): 24.5640153558052 23.291865917603 28.1211003745318 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 8.4680149956093 Final number of output spheres is: 120 Number of polar spheres: 63 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 39