usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.9195555555556 14.7208888888889 16.6643333333333
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 663
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 444
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 444
Number of spheres polar: 231, nonpolar: 124, out of current total: 444
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.75555 38.87247 6.20857 24.54708 6.67213 26.24934
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 212
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 182
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 152
Spheres center of coords (x y z): 29.871046381579 10.8181455263158 17.9214920394737
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.96586549916434
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 15
Number of spheres that are near neither polar nor nonpolar receptor atoms: 17
Final number of spheres that are from crystallographic ligand: 9