usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): 28.8956666666667 14.7367777777778 16.6626666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 660 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 451 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 451 Number of spheres polar: 244, nonpolar: 111, out of current total: 451 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.65148 38.84978 5.62967 24.02630 6.66656 26.63931 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 151 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 120 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 101 Spheres center of coords (x y z): 29.9099954455446 10.7212267326733 18.179493960396 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.25699108245618 Final number of output spheres is: 45 Number of polar spheres: 23 Number of nonpolar spheres: 10 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 9