usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.8802222222222 14.7334444444444 16.668
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 660
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 450
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 450
Number of spheres polar: 232, nonpolar: 124, out of current total: 450
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.76241 38.76081 5.64963 24.01539 6.78851 26.60182
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 205
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 177
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 140
Spheres center of coords (x y z): 30.3018433571429 11.0400570714286 18.3151263571429
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.63946480924653
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 16
Number of spheres that are near neither polar nor nonpolar receptor atoms: 16
Final number of spheres that are from crystallographic ligand: 9