There are 9 ligand heavy atoms Ligand center of coords (x y z): 28.8947777777778 14.723 16.6704444444444 useligsph not on Starting number of spheres from sph/sph cluster 0: 646 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (12 angstroms): 541 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 541 Number of spheres polar: 266, nonpolar: 167, out of current total: 541 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.29381 40.49908 5.63748 25.86728 4.72259 28.59060 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 173 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 140 No crystallographic spheres present, so determining sphere nearest center of ligand (x y z): 28.8947777777778 14.723 16.6704444444444 Center point: 61 xyz: 29.11250 14.48062 16.58294 After continuity checking, number of spheres is: 108 Final number of output spheres is: 108 Number of polar spheres: 39 Number of nonpolar spheres: 31 Number of spheres that are near neither polar nor nonpolar receptor atoms: 38 Final number of spheres that are from crystallographic ligand: 0