usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.8947777777778 14.723 16.6704444444444
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 646
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 477
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 477
Number of spheres polar: 245, nonpolar: 138, out of current total: 477
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.79300 38.75098 5.63748 24.03867 6.83807 26.61990
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 149
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 123
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 101
Spheres center of coords (x y z): 29.7602061386138 10.7966863366337 18.2227978217822
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.25863756956048
Final number of output spheres is: 45
Number of polar spheres: 20
Number of nonpolar spheres: 15
Number of spheres that are near neither polar nor nonpolar receptor atoms: 10
Final number of spheres that are from crystallographic ligand: 9