usefragsph not on
There are 9 ligand heavy atoms
Ligand center of coords (x y z): 28.8947777777778 14.723 16.6704444444444
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 646
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 477
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 477
Number of spheres polar: 245, nonpolar: 138, out of current total: 477
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 19.79300 38.75098 5.63748 24.03867 6.83807 26.61990
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 209
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 183
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 142
Spheres center of coords (x y z): 30.0817128873239 11.2166106338028 18.7479545774648
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.48151953685122
Final number of output spheres is: 60
Number of polar spheres: 28
Number of nonpolar spheres: 19
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 9