usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -13.004625 28.108 44.132375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 684 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 471 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 471 Number of spheres polar: 226, nonpolar: 159, out of current total: 471 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -22.79616 -3.18803 18.11878 38.07261 35.65795 54.13114 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 225 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 190 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 154 Spheres center of coords (x y z): -12.6993159090909 28.5490514935065 48.5256531818182 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.82255222805318 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 8