usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -0.76475 45.962375 14.311625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 213 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 192 WARNING: removing a crystallographic sphere that is distance 1.02074335657892 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 190 Number of spheres polar: 90, nonpolar: 63, out of current total: 190 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.53697 9.17159 42.02429 55.66424 5.24598 22.42773 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 85 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 72 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 60 Spheres center of coords (x y z): 1.460485 47.1114398333333 13.2929145 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.89855731897176 Final number of output spheres is: 45 Number of polar spheres: 22 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 7