usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -0.76625 46.072875 14.22475 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 235 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 210 WARNING: removing a crystallographic sphere that is distance 1.08042491641021 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 209 Number of spheres polar: 97, nonpolar: 65, out of current total: 209 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.63070 9.19228 42.44501 55.98571 4.27206 22.27950 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 89 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 73 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 45 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 7