usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -0.76625 46.072875 14.22475 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 235 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 210 WARNING: removing a crystallographic sphere that is distance 1.08042491641021 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 209 Number of spheres polar: 97, nonpolar: 65, out of current total: 209 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.63070 9.19228 42.44501 55.98571 4.27206 22.27950 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 124 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 107 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 68 Spheres center of coords (x y z): -0.226755735294118 47.9434177941176 14.0485511764706 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.94775278096875 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 7