usefragsph not on There are 8 ligand heavy atoms Ligand center of coords (x y z): -0.788875 45.943625 14.27175 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 203 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 166 WARNING: removing a crystallographic sphere that is distance 1.02856696427603 angstroms from closest receptor atom Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 165 Number of spheres polar: 80, nonpolar: 46, out of current total: 165 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.08059 9.12188 43.90175 55.70728 4.36479 21.79162 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 87 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 69 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 42 Final number of output spheres is: 42 Number of polar spheres: 16 Number of nonpolar spheres: 9 Number of spheres that are near neither polar nor nonpolar receptor atoms: 17 Final number of spheres that are from crystallographic ligand: 7