usefragsph not on
There are 19 ligand heavy atoms
Ligand center of coords (x y z): -2.58421052631579 49.189947368421 2.05810526315789
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 889
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 560
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 558
Number of spheres polar: 250, nonpolar: 177, out of current total: 558
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.54421 7.20422 39.20022 59.11859 -7.94002 12.03983
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 322
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 269
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 172
Spheres center of coords (x y z): -2.79480761627907 52.1034945348837 3.39998069767442
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.8465819302281
Final number of output spheres is: 60
Number of polar spheres: 29
Number of nonpolar spheres: 17
Number of spheres that are near neither polar nor nonpolar receptor atoms: 14
Final number of spheres that are from crystallographic ligand: 19