Enabling DOCK Developer Scripts incl Database Preparation
Intel/Linux
inactives
we got past inactivesDB.ism
actives
we got past actives.ism
node-6-04.c.bkslab.org
du2 starts
1 molecule processed, 0 errors

convert.py (MDL SDF -> Isomeric SMILES):
	mols in: 2	mols out: 2

Total: 2 mols processed.
mol2nam v1.9  Structure to Name Conversion
OpenEye Scientific Software, February 2009


convert.py (Tripos MOL2 -> Isomeric SMILES):
	mols in: 1	mols out: 1

Total: 1 mols processed.
mid: No such file or directory.
hi: No such file or directory.
lo: No such file or directory.
mid: No such file or directory.
first try already in
then inzinc
count is 0
bzcat: Can't open input file 93: No such file or directory.
bzcat: Can't open input file 14: No such file or directory.

convert.py (Tripos MOL2 -> MDL SDF):
	mols in: 1	mols out: 1

Total: 1 mols processed.
count is 0
nothing to compress
bzcat: Can't open input file 93: No such file or directory.
bzcat: Can't open input file 14: No such file or directory.
nothing to compress
du2.csh script updated
ligand processing
MakeDOCK 2.0, modified by J.Irwin and M.Mysinger.
Previous versions by D.M.Lorber, B.Q.Wei, A.N.Kirschner, and N.Huang
Using scripts in /raid5/people/mysinger/xyz/dockenv.
Creating binding-site residue list
Creating molecular surface

real	0m1.443s
user	0m0.259s
sys	0m0.104s
Creating sphgen spheres
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  0: 826 spheres.
   1.   1.   1.   1.   1.   4.   4.   7.   7.   7.  14.  14.  14.  14. 170. 170. 170. 170. 170. 170. 170. 170. 170. 170. 170. 170. 170. 170. 173. 173. 173. 173. 173. 173. 173. 173. 173. 173. 173. 284. 284. 284. 285. 285. 285. 289. 289. 289. 289. 291. 291. 291. 291. 291. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 600. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 846. 868. 868. 868. 868. 868. 868. 868. 868. 868. 868. 868. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 876. 888. 890. 895. 895. 895. 895. 895. 895. 895. 895. 895. 895. 895. 895. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 896. 897. 897. 897. 898. 898. 898. 898. 898. 898. 898. 898. 898. 898. 898. 898. 924. 924. 924. 924. 924. 927. 928. 928. 928. 928. 928. 928. 928. 930. 930. 930. 930. 930. 930. 932. 932. 932. 932. 932. 932. 932. 932. 933. 933. 933. 933. 933. 933. 933. 985. 985. 985. 985. 985. 985. 986. 986.1146.1146.1149.1149.1150.1150.1150.1150.1152.1152.1152.1152.1154.1154.1154.1154.1156.1156.1156.1156.1168.1168.1170.1170.1174.1174.1174.1174.1174.1174.1175.1175.1175.1175.1176.1177.1177.1177.1177.1177.1177.1179.1179.1179.1179.1179.1179.1179.1179.1181.1182.1182.1182.1182.1182.1211.1211.1213.1213.1214.1215.1215.1215.1215.1215.1215.1215.1215.1215.1215.1215.1216.1216.1216.1216.1216.1216.1216.1216.1216.1216.1218.1222.1227.1227.1227.1228.1228.1228.1230.1230.1230.1230.1232.1232.1232.1232.1232.1232.1232.1232.1233.1233.1233.1233.1233.1233.1233.1233.1233.1238.1241.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1242.1243.1243.1243.1243.1244.1244.1244.1244.1244.1244.1244.1244.1244.1244.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1245.1247.1247.1247.1247.1247.1247.1263.1263.1263.1267.1267.1267.1267.1267.1267.1267.1267.1267.1267.1270.1270.1270.1270.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1344.1352.1352.1352.1352.1352.1352.1352.1352.1352.1352.1352.1357.1357.1358.1358.1358.1359.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1361.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1362.1363.1363.1363.1364.1364.1366.1366.1366.1366.1369.1369.1369.1369.1369.1370.1371.1371.1371.1371.1371.1371.1372.1373.1373.1374.1374.1374.1374.1376.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1377.1379.1379.1379.1379.1379.1379.1380.1382.1383.1383.1383.1383.1383.1383.1383.1383.1383.1383.1383.1384.1385.1385.1385.1385.1385.1385.1385.1385.1385.1385.1385.1385.1385.1385.1387.1388.1388.1388.1388.1392.1392.1393.1393.1395.1395.1395.1395.1395.1395.1397.1397.1397.1402.1402.1404.1404.1404.1405.1405.1405.1405.1405.1405.1406.1406.1406.1406.1406.1408.1408.1411.1411.1412.1412.1412.1412.1412.1412.1412.1414.1416.1416.1416.1416.1416.1416.1416.1416.1416.1421.1421.1421.1421.1421.1421.1421.1423.1423.1423.1423.1423.1423.1423.1423.1423.1428.1430.1430.1432.1432.1432.1432.1432.1432.1432.1432.1432.1433.1433.1433.1433.1435.1435.1435.1435.1435.1442.1442.1448.1462.1465.1465.1465.1465.1465.1465.1469.1470.1470.1470.1470.1572.1572.1572.1572.1572.1572.1572.1572.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1573.1575.1575.1575.1575.1576.1576.1576.1576.1576.1576.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1577.1578.1578.1578.1578.1578.1578.1578.1578.1578.1578.1578.1579.1579.1581.1582.1582.1582.1582.1582.1582.1582.1582.1583.1583.1583.1583.1583.1583.1583.1583.1583.1583.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1628.1629.1629.1629.1629.1629.1629.1629.1629.1630.1630.1630.1631.1631.1631.1631.1631.1631.1632.1633.1633.1633.1633.1633.1633.1633.1633.1633.1634.1635.1635.1635.1635.1639.1639.1640.1640.1640.1640.1640.1640.1640.1640.FORTRAN STOP

Converting ligand atoms to spheres
 Enter name of sphere cluster file:
 Enter cluster number to process (<0 = all):  Generate surfaces as well as pdb files (<N>/Y)?  Enter name for output PDB file name:

Cluster  1:   9 spheres.
   1.   2.   3.   4.   5.   6.   7.   8.   9.FORTRAN STOP

Adding essential hydrogens to receptor
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 46, in ?
    newrec = server.unitedProtReceptor(rec)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/protonate/4094918842/rec.crg'">
make: *** [grids/rec.crg] Error 1
Grid preparation completed normally.
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/rec+sph.phi                                                            
 In source file scoreopt_so.f, at line number 140
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/vdw.parms.amb.mindock                                                  
 In source file scoreopt_so.f, at line number 198
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/rec+sph.phi                                                            
 In source file scoreopt_so.f, at line number 140
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/vdw.parms.amb.mindock                                                  
 In source file scoreopt_so.f, at line number 198
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/rec+sph.phi                                                            
 In source file scoreopt_so.f, at line number 140
PGFIO-F-209/OPEN/unit=2/'OLD' specified for file which does not exist.
 File name = ../grids/vdw.parms.amb.mindock                                                  
 In source file scoreopt_so.f, at line number 198
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">
slept 360 waiting for decoys
Traceback (most recent call last):
  File "/raid5/people/mysinger/xyz/dockenv/etc/xmlclient.py", line 65, in ?
    result = server.qsubset(data, 'db')
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1096, in __call__
    return self.__send(self.__name, args)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1383, in __request
    verbose=self.__verbose
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1147, in request
    return self._parse_response(h.getfile(), sock)
  File "/usr/lib64/python2.4/xmlrpclib.py", line 1286, in _parse_response
    return u.close()
  File "/usr/lib64/python2.4/xmlrpclib.py", line 744, in close
    raise Fault(**self._stack[0])
xmlrpclib.Fault: <Fault 1: "exceptions.IOError:[Errno 2] No such file or directory: '/raid1/people/www/subsets/4094918839/db.db.gz'">