usefragsph not on There are 9 ligand heavy atoms Ligand center of coords (x y z): -1.763 14.4916666666667 -16.8727777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 708 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 480 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 480 Number of spheres polar: 264, nonpolar: 141, out of current total: 480 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.66512 8.04362 4.96937 23.18333 -26.77320 -6.91334 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 232 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 183 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 100 Spheres center of coords (x y z): -0.1196506 17.5076162 -14.2923849 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.30876062656853 Final number of output spheres is: 60 Number of polar spheres: 29 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 9