usefragsph not on There are 6 ligand heavy atoms Ligand center of coords (x y z): 27.1846666666667 -7.132 95.7356666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 300 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 234 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 234 Number of spheres polar: 111, nonpolar: 67, out of current total: 234 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.27671 37.04081 -15.87535 2.73107 87.13725 98.14810 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 136 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 116 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 108 Spheres center of coords (x y z): 27.0517628703704 -7.0639662962963 93.4121462962963 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.72957109411444 Final number of output spheres is: 60 Number of polar spheres: 30 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 6