usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -26.1032222222222 0.776444444444444 16.4335185185185 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 988 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 556 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 552 Number of spheres polar: 211, nonpolar: 212, out of current total: 552 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.81664 -18.70702 -9.15625 10.68644 6.51217 25.71312 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 155 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 130 Spheres center of coords (x y z): -26.985114 1.80081984615385 16.6243060769231 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.70470077572204 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 27