usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -25.67925 0.606142857142857 16.5172857142857 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1092 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 543 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 539 Number of spheres polar: 192, nonpolar: 223, out of current total: 539 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.48645 -18.50400 -9.38920 10.60273 6.55621 25.92944 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 316 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 285 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 256 Spheres center of coords (x y z): -26.2979281640625 1.649116875 17.4286198828125 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.80008104154465 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 3 Final number of spheres that are from crystallographic ligand: 28