usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -25.7448888888889 0.843407407407407 16.3529259259259 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1070 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 598 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 593 Number of spheres polar: 215, nonpolar: 212, out of current total: 593 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.70592 -15.81510 -9.07701 10.74095 6.38273 26.10923 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 214 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 182 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 158 Spheres center of coords (x y z): -26.3314651898734 2.30098721518987 16.7880843670886 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.83452065174435 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 27