usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -25.996962962963 0.683666666666667 16.5509259259259 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1037 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 603 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 597 Number of spheres polar: 225, nonpolar: 234, out of current total: 597 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -35.80373 -18.61802 -9.27586 10.64429 6.55798 26.50300 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 198 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 172 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 149 Spheres center of coords (x y z): -26.5881445637584 1.84425684563758 16.8810576510067 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.49489237263827 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 27