usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -26.3190357142857 0.319464285714286 16.7263571428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1067 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 518 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 516 Number of spheres polar: 181, nonpolar: 215, out of current total: 516 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.25406 -18.79459 -9.66342 10.30227 6.73511 26.69839 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 292 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 263 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 232 Spheres center of coords (x y z): -26.9573157758621 0.720631637931034 17.7359463793104 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38004847126906 Final number of output spheres is: 60 Number of polar spheres: 31 Number of nonpolar spheres: 24 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 28