usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -1.14294444444444 -16.8962777777778 14.2888333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 857 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 558 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 553 Number of spheres polar: 209, nonpolar: 199, out of current total: 553 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.69463 8.83550 -25.35053 -6.97789 4.30222 24.25888 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 296 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 261 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 239 Spheres center of coords (x y z): -1.92908221757322 -18.571689832636 12.0050558577406 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.4151608634158 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 21 Number of spheres that are near neither polar nor nonpolar receptor atoms: 15 Final number of spheres that are from crystallographic ligand: 18