usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -1.39363157894737 -16.9122105263158 13.9271052631579 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 874 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 571 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 568 Number of spheres polar: 218, nonpolar: 195, out of current total: 568 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.64696 8.60145 -24.66643 -7.06831 3.95157 23.71532 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 201 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 147 Spheres center of coords (x y z): -2.7915793877551 -18.8779125170068 11.4217132653061 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.44073082689004 Final number of output spheres is: 45 Number of polar spheres: 20 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 19