usefragsph not on There are 19 ligand heavy atoms Ligand center of coords (x y z): -0.960631578947368 -17.1609473684211 13.9823684210526 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 760 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 495 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 492 Number of spheres polar: 192, nonpolar: 162, out of current total: 492 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.67586 8.91951 -25.37476 -7.35158 4.11579 23.90334 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 260 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 218 Spheres center of coords (x y z): -1.54428472477064 -18.7959879357798 12.6210852752294 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.98960455219107 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 19