usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -0.554555555555556 -15.5209444444444 15.4966666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 804 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 527 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 526 Number of spheres polar: 198, nonpolar: 183, out of current total: 526 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.35751 9.38507 -24.61842 -5.53158 5.61881 25.38684 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 192 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 155 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 97 Spheres center of coords (x y z): 0.13679824742268 -17.0919749484536 14.1816480412371 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.27121099579453 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 18