usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -1.6454375 -14.5824375 14.6285625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 806 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 493 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 491 Number of spheres polar: 196, nonpolar: 175, out of current total: 491 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.63677 7.80099 -22.81528 -4.58305 4.66688 24.41700 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 163 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 133 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 99 Spheres center of coords (x y z): -1.9341798989899 -16.9339587878788 11.5489352525252 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.38874086835418 Final number of output spheres is: 45 Number of polar spheres: 21 Number of nonpolar spheres: 12 Number of spheres that are near neither polar nor nonpolar receptor atoms: 12 Final number of spheres that are from crystallographic ligand: 16