usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -1.6458125 -14.3959375 14.6145625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 752 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 477 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 475 Number of spheres polar: 186, nonpolar: 181, out of current total: 475 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.28620 8.20368 -22.64573 -4.39810 4.68352 24.58704 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 246 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 214 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 157 Spheres center of coords (x y z): -1.89634840764331 -16.3979070063694 11.7082710191083 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.12013700557973 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 16