usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -1.49885 -17.9047 14.0122 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 722 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 431 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 430 Number of spheres polar: 186, nonpolar: 145, out of current total: 430 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.69966 8.37379 -23.43867 -8.34265 4.01657 23.74877 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 232 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 186 Spheres center of coords (x y z): -2.3121259139785 -18.3689026344086 12.6169208064516 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.06499843698535 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 18 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 20