usefragsph not on There are 20 ligand heavy atoms Ligand center of coords (x y z): -2.0659 -17.81065 14.094 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 743 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 484 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 482 Number of spheres polar: 156, nonpolar: 167, out of current total: 482 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.06142 6.94523 -25.20040 -8.42333 4.09577 23.99063 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 189 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 157 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 146 Spheres center of coords (x y z): -3.36634273972603 -18.868135890411 11.1022452739726 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9923679678444 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 15 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 20