usefragsph not on There are 11 ligand heavy atoms Ligand center of coords (x y z): -1.60736363636364 -15.007 16.2186363636364 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 734 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 501 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 501 Number of spheres polar: 274, nonpolar: 122, out of current total: 501 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.41352 7.52356 -22.85479 -5.04862 6.22435 26.08581 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 240 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 197 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 171 Spheres center of coords (x y z): -2.40660994152047 -18.308118128655 14.7056394152047 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21499127739741 Final number of output spheres is: 60 Number of polar spheres: 37 Number of nonpolar spheres: 17 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 11