usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -0.162555555555556 -16.7092222222222 14.679 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 864 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 535 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 533 Number of spheres polar: 256, nonpolar: 163, out of current total: 533 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.12213 9.82231 -25.81376 -6.72000 4.67956 24.43781 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 190 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 119 Spheres center of coords (x y z): -1.49862193277311 -18.8277206722689 12.2736416806723 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.36845180830385 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 20 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 18