usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -1.7164375 -14.3618125 14.584375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 791 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 520 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 520 Number of spheres polar: 233, nonpolar: 173, out of current total: 520 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.63706 8.17212 -22.73717 -4.37600 4.58700 24.57761 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 256 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 216 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 180 Spheres center of coords (x y z): -3.50255505555556 -16.7498657777778 12.7541518333333 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.74463736650153 Final number of output spheres is: 60 Number of polar spheres: 28 Number of nonpolar spheres: 19 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 16