usefragsph not on There are 16 ligand heavy atoms Ligand center of coords (x y z): -1.6661875 -14.4088125 14.61625 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 716 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 483 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 481 Number of spheres polar: 191, nonpolar: 178, out of current total: 481 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -11.63175 6.62613 -22.78998 -4.41635 4.63320 24.60228 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 163 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 124 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 107 Spheres center of coords (x y z): -3.19426429906542 -16.8692717757009 12.0975976635514 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.5674780181668 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 13 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 16