usefragsph not on There are 18 ligand heavy atoms Ligand center of coords (x y z): -1.483 15.2487222222222 18.4643888888889 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 651 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 421 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 420 Number of spheres polar: 162, nonpolar: 108, out of current total: 420 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.67812 8.47931 5.30711 23.00197 8.49714 28.43042 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 190 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 145 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 124 Spheres center of coords (x y z): -2.02742201612903 17.586067983871 21.3706178225806 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.67674890891253 Final number of output spheres is: 45 Number of polar spheres: 18 Number of nonpolar spheres: 11 Number of spheres that are near neither polar nor nonpolar receptor atoms: 16 Final number of spheres that are from crystallographic ligand: 18