usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): -0.680571428571429 17.7341785714286 21.8075 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 811 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 493 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 491 Number of spheres polar: 153, nonpolar: 165, out of current total: 491 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.63038 9.30455 7.76248 24.93032 11.81373 30.76362 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 203 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 164 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 153 Spheres center of coords (x y z): -3.21030901960784 18.7600639869281 23.2049430065359 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.10173747688547 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 16 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 28