usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): -17.8675 38.1245769230769 -4.13669230769231 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 823 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 468 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 467 Number of spheres polar: 178, nonpolar: 150, out of current total: 467 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.81550 -7.91205 28.12714 46.59714 -14.07927 5.63412 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 152 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 139 Spheres center of coords (x y z): -20.2191389208633 40.1984576978417 -2.67892935251798 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.77363811307022 Final number of output spheres is: 45 Number of polar spheres: 24 Number of nonpolar spheres: 14 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 26