usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 0.259523809523809 17.0042857142857 18.7970952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 798 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 495 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 492 Number of spheres polar: 180, nonpolar: 179, out of current total: 492 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -9.61600 10.20017 7.13560 25.98535 8.79957 28.72151 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 275 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 245 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 222 Spheres center of coords (x y z): -0.193024864864865 18.8584371171171 20.2445592342342 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.42146874479162 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 14 Final number of spheres that are from crystallographic ligand: 21